API

pyrolite.plot

Submodule with various plotting and visualisation functions.

• pyrolite.plot.pyroplot (Pandas Interface)
• pyrolite.plot.spider
• pyrolite.plot.density
• pyrolite.plot.density.grid
• pyrolite.plot.density.ternary
• pyrolite.plot.parallel
• pyrolite.plot.stem
• pyrolite.plot.biplot
• pyrolite.plot.templates
• pyrolite.plot.color

pyrolite.geochem

Submodule for working with geochemical data.

• pyrolite.geochem.pyrochem (Pandas Interface)
• pyrolite.geochem.ind
• pyrolite.geochem.transform
• pyrolite.geochem.norm
• pyrolite.geochem.parse
• pyrolite.geochem.magma
• pyrolite.geochem.alteration
• pyrolite.geochem.ions
• pyrolite.geochem.isotope

pyrolite.comp

Submodule for working with compositional data.

• pyrolite.comp.pyrocomp (Pandas Interface)
• pyrolite.comp.codata
• pyrolite.comp.aggregate
• pyrolite.comp.impute

pyrolite.mineral

A submodule for working with mineral data.

• pyrolite.mineral.template
• pyrolite.mineral.normative
• pyrolite.mineral.transform
• pyrolite.mineral.sites
• pyrolite.mineral.lattice
• pyrolite.mineral.mindb

pyrolite.util

Various utilities used by other submodules.

• pyrolite.util.general
  • Timewith
  • temp_path()
  • tempdir()
  • flatten_dict()
  • swap_item()
  • copy_file()
  • remove_tempdir()
• pyrolite.util.pd
  • drop_where_all_empty()
  • read_table()
  • column_ordered_append()
  • accumulate()
  • to_frame()
  • to_ser()
  • to_numeric()
  • zero_to_nan()
  • outliers()
  • concat_columns()
  • uniques_from_concat()
  • df_from_csvs()
• pyrolite.util.plot
  • pyrolite.util.plot.axes
  • pyrolite.util.plot.density
  • pyrolite.util.plot.export
  • pyrolite.util.plot.grid
  • pyrolite.util.plot.helpers
  • pyrolite.util.plot.interpolation
  • pyrolite.util.plot.legend
  • pyrolite.util.plot.style
  • pyrolite.util.plot.transform
• pyrolite.util.text
  • to_width()
  • normalise_whitespace()
  • remove_prefix()
  • remove_suffix()
  • quoted_string()
  • titlecase()
  • string_variations()
  • parse_entry()
  • split_records()
  • slugify()
  • int_to_alpha()
• pyrolite.util.web
  • urlify()
  • internet_connection()
  • download_file()
• pyrolite.util.time
  • listify()
  • age_name()
  • import_colors()
  • timescale_reference_frame()
  • Timescale
• pyrolite.util.math
  • eigsorted()
  • augmented_covariance_matrix()
  • interpolate_line()
  • grid_from_ranges()
  • flattengrid()
  • linspc_()
  • logspc_()
  • logrng_()
  • linrng_()
  • isclose()
  • is_numeric()
  • significant_figures()
  • signify_digit()
  • most_precise()
  • equal_within_significance()
  • helmert_basis()
  • symbolic_helmert_basis()
  • on_finite()
  • nancov()
  • solve_ratios()
• pyrolite.util.lambdas
  • calc_lambdas()
  • pyrolite.util.lambdas.params
  • pyrolite.util.lambdas.eval
  • pyrolite.util.lambdas.oneill
  • pyrolite.util.lambdas.opt
  • pyrolite.util.lambdas.plot
  • pyrolite.util.lambdas.transform
• pyrolite.util.distributions
  • get_scaler()
  • sample_kde()
  • sample_ternary_kde()
  • lognorm_to_norm()
  • norm_to_lognorm()
• pyrolite.util.synthetic
  • random_cov_matrix()
  • random_composition()
  • normal_frame()
  • normal_series()
  • example_spider_data()
  • example_patterns_from_parameters()
• pyrolite.util.spatial
  • great_circle_distance()
  • piecewise()
  • spatiotemporal_split()
  • NSEW_2_bounds()
  • levenshtein_distance()
• pyrolite.util.resampling
  • univariate_distance_matrix()
  • get_spatiotemporal_resampling_weights()
  • add_age_noise()
  • spatiotemporal_bootstrap_resample()
• pyrolite.util.missing
  • md_pattern()
  • cooccurence_pattern()
• pyrolite.util.units
  • scale()
• pyrolite.util.types
  • iscollection()
• pyrolite.util.meta
  • get_module_datafolder()
  • pyrolite_datafolder()
  • take_me_to_the_docs()
  • sphinx_doi_link()
  • subkwargs()
  • inargs()
  • numpydoc_str_param_list()
  • get_additional_params()
  • update_docstring_references()
• pyrolite.util.skl
  • pyrolite.util.skl.vis
  • pyrolite.util.skl.pipeline
  • pyrolite.util.skl.select
  • pyrolite.util.skl.transform
  • pyrolite.util.skl.impute
• pyrolite.util.classification
  • PolygonClassifier
  • TAS
  • USDASoilTexture
  • QAP
  • FeldsparTernary
  • PeralkalinityClassifier
  • JensenPlot
  • SpinelTrivalentTernary
  • SpinelFeBivariate
  • Pettijohn
  • Herron
• pyrolite.util.log
  • Handle()
  • ToLogger
  • stream_log()

See also

Extensions